Step 4 / 4PDF4MD.py

Figurebook Generation

Compiles the plots, notes, contact summaries, and structural panels into a report-ready PDF figurebook.

Why this step matters

A good MD workflow should not stop at scattered files. Step 4 packages results so a team can review, compare, and communicate the simulation clearly.

Concepts to understand

figure manifest detection standard ligand, protein, peptide, biological, and PROTAC report paths plot captions and interpretive notes publication-ready PDF assembly

Common outputs

MD_ANALYSIS_FIGUREBOOK.pdf PROTAC_MD_ANALYSIS_FIGUREBOOK.pdf

Typical commands

python 4PDF4MD.py